• B. rapa was a paleohexaploidy with three subgenomes which share the same diploid ancestor of the model species A. thaliana. Among these three subgenomes, we observed biased gene fractionation (gene losing). We named the lest fractionized subgenome as LF, the moderate gene fractionized as MF1 and the most gene fractionized as MF2. Here we provided for each A. thaliana orthologous gene, the syntenic paralog in Brassicaceae species.

    Cite synteny analysis "Cheng F, Wu J, Fang L and Wang X (2012). Syntenic gene analysis between Brassica rapa and other Brassicaceae species. Front. Plant Sci. 3:198. doi: 10.3389/fpls.2012.00198".

  • Search syntenic genes between A. thaliana and Brassicaceae species.  

    Step 1 : select species to display:  

    select all :

     Ath     Bra     Bol     Spa     Aly     Lal     Cru     Sir     Aar     Tha
     Tsa     BnaA     BnaC     Csa    

    Aar: Aethionema arabicum      Ath: Arabidopsis thaliana      Aly: Arabidopsis lyrata
    BnaA: Brassica napus A genome      BnaC: Brassica napus C genome
    Bra: Brassica rapa      Bol: Brassica oleracea      Cru: Capsella rubella
    Csa: Camelina sativa      Lal: Leavenworthia alabamica      Sir: Sisymbrium irio
    Spa: Schrenkiella parvula      Tha: Thellungiella halophila      Tsa: Thellungiella salsuginea

    Step 2 : input the gene ID:  

            Flanking genes.   Help                      
    examples: AT4G23980, Bra019255, Bol009585