• B. rapa was a paleohexaploidy with three subgenomes which share the same diploid ancestor of the model species A. thaliana. Among these three subgenomes, we observed biased gene fractionation (gene losing). We named the lest fractionized subgenome as LF, the moderate gene fractionized as MF1 and the most gene fractionized as MF2. Here we provided for each A. thaliana orthologous gene, the syntenic paralog in Brassicaceae species.

    Cite synteny analysis "Cheng F, Wu J, Fang L and Wang X (2012). Syntenic gene analysis between Brassica rapa and other Brassicaceae species. Front. Plant Sci. 3:198. doi: 10.3389/fpls.2012.00198".

  • Search syntenic genes between A. thaliana and Brassicaceae species.  

    Step 1 : selecet species to display:  

    select all :

     Ath     Bra     Bol     Spa     Aly     Lal     Cru     Sir     Aar     Tha
     Tsa     BnaA     BnaC     Csa    

    Full name and more information about the species please click the link

    Step 2 : input the gene ID:  

            Flanking genes.   Help                      
    examples: AT4G23980, Bra019255, Bol009585