Anthocyanin genes in B. rapa

At NameAt GeneBr NameBr GeneAnnotationReference
PAL1AT2G37040BrPAL1.1Bra005221 (s)Phenylalanine ammonia-lyase 1(Ohl et al., 1990)
PAL1AT2G37040BrPAL1.2Bra017210 (s)Phenylalanine ammonia-lyase 1-
PAL2AT3G53260BrPAL2.1Bra006985 (s)Phenylalanine ammonia-lyase 2(Shufflebottom et al., 1993)
PAL2AT3G53260BrPAL2.2Bra039777 (s)Phenylalanine ammonia-lyase 2-
PAL2AT3G53260BrPAL2.3Bra003126 (s)Phenylalanine ammonia-lyase 2-
PAL3AT5G04230BrPAL3.1Bra028793 (s)Phenylalanine ammonia-lyase 3(Wanner et al., 1995)
PAL3AT5G04230BrPAL3.2Bra030322Phenylalanine ammonia-lyase 3-
PAL4AT3G10340BrPAL4Bra029831 (s)Phenylalanine ammonia-lyase 4(Cochrane et al., 2004)
C4HAT2G30490BrC4H1Bra018311 (s)Cinnamate-4-hydroxylase(Mizutani et al., 1997)
C4HAT2G30490BrC4H2Bra021636 (s)Cinnamate-4-hydroxylase-
C4HAT2G30490BrC4H3Bra021637 T(s)Cinnamate-4-hydroxylase-
C4HAT2G30490BrC4H4Bra022802 (s)Cinnamate-4-hydroxylase-
C4HAT2G30490BrC4H5Bra022803 T(s)Cinnamate-4-hydroxylase-
4CL1AT1G51680Br4CL1Bra030429 (s)4-coumarate:CoA ligase 1(Ehlting et al., 1999)
4CL2AT3G21240Br4CL2.1Bra031262 (s)4-coumarate:CoA ligase 2(Ehlting et al., 1999)
4CL2AT3G21240Br4CL2.2Bra031263 T(s)4-coumarate:CoA ligase 2-
4CL2AT3G21240Br4CL2.3Bra031265 T(s)4-coumarate:CoA ligase 2-
4CL2AT3G21240Br4CL2.4Bra031266 T(s)4-coumarate:CoA ligase 2-
4CL3AT1G65060Br4CL3Bra004109 (s)4-coumarate:CoA ligase 3(Ehlting et al., 1999)
4CL5AT3G21230Br4CL5.1Bra001819 (s)4-coumarate:CoA ligase 5(Ehlting et al., 1999)
4CL5AT3G21230Br4CL5.2Bra001820 T(s)4-coumarate:CoA ligase 5-
CHSAT5G13930BrCHS1Bra008792 (s)Chalcone synthase(Shirley et al., 1995)
CHSAT5G13930BrCHS2Bra006224 (s)Chalcone synthase-
CHSAT5G13930BrCHS3Bra023441 (s)Chalcone synthase-
CHSAT5G13930BrCHS4Bra036307Chalcone synthase-
CHSAT5G13930BrCHS5Bra020688Chalcone synthase-
CHIAT3G55120BrCHI1Bra007142 (s)Chalcone isomerase(Shirley et al., 1995)
CHIAT3G55120BrCHI2Bra003209 (s)Chalcone isomerase-
CHIAT3G55120BrCHI3Bra017728Chalcone isomerase-
F3HAT3G51240BrF3H1Bra036828 (s)Flavanone 3-hydroxylase(Pelletier and Shirley, 1996)
F3HAT3G51240BrF3H2Bra029996 (s)Flavanone 3-hydroxylase-
F3HAT3G51240BrF3H3Bra012862 (s)Flavanone 3-hydroxylase-
F3'HAT5G07990BrF3'HBra009312 (s)Flavonoid 3'-hydroxylase(Schoenbohm et al., 2000)
FLS1AT5G08640BrFLS1Bra009358 (s)Flavonol synthase 1(Pelletier et al., 1997)
FSL2AT5G63580BrFLS2Bra038647 (s)Flavonol synthase 2(Owens et al., 2008)
FLS3AT5G63590BrFLS3.1Bra038648 T(s)Flavonol synthase 3-
FLS4AT5G63595BrFLS3.2Bra029211 (s)Flavonol synthase 4-
FLS5AT5G63600BrFLS3.3Bra029212 T(s)Flavonol synthase 5-
FLS5AT5G63600BrFLS4Bra037747 (s)Flavonol synthase 5-
FLS6AT5G43935BrFLS6-Flavonol synthase 6(Owens et al., 2008)
DFRAT5G42800BrDFRBra027457 (s)Dihydroflavonol-4-reductase(Shirley et al., 1992)
ANS (LDOX)AT4G22880BrANS1Bra013652 (s)Leucoanthocyanidin dioxygenase(Pelletier et al., 1997)
ANS (LDOX)AT4G22880BrANS2Bra019350 (s)Leucoanthocyanidin dioxygenase-
UGT79B1AT5G54060BrUGT79B1.1Bra003021 (s)Anthocyanin 3-O-glucoside: 2-O-xylosyltransferase(Yonekura-Sakakibara et al., 2012)
UGT79B1AT5G54060BrUGT79B1.2Bra035004Anthocyanin 3-O-glucoside: 2-O-xylosyltransferase-
UGT75C1AT4G14090BrUGT75C1Bra038445 (s)Anthocyanin 5-O-glucosyltransferase(Tohge et al., 2005)
UGT78D2AT5G17050BrUGT78D2Bra023594 (s)Anthocyanidin 3-O-glucosyltransferase(Yin et al., 2012)
MYB11AT3G62610-MYB Domain Protein 11(Stracke et al., 2007; Stracke et al., 2010)
MYB12AT2G47460BrMYB12.1Bra004456 (s)MYB Domain Protein 12(Stracke et al., 2007; Stracke et al., 2010)
MYB12AT2G47460BrMYB12.2Bra000453 (s)MYB Domain Protein 12-
MYB111AT5G49330BrMYB111.1Bra037419 (s)MYB Domain Protein 111(Stracke et al., 2007; Stracke et al., 2010)
MYB111AT5G49330BrMYB111.2Bra020647 (s)MYB Domain Protein 111-
MYB111AT5G49330BrMYB111.3Bra036145 (s)MYB Domain Protein 111-
PAP1(MYB75)AT1G56650-Bra039763Production of Anthocyanin Pigment 1(Stracke et al., 2001)
PAP1(MYB75)AT1G56650-Bra001917Production of Anthocyanin Pigment 1-
PAP1(MYB75)AT1G56650-Bra004162Production of Anthocyanin Pigment 1-
PAP2(MYB90)AT1G66390-Bra004162 (s)Production of Anthocyanin Pigment 2(Stracke et al., 2001)
PAP2(MYB90)AT1G66390-Bra001917Production of Anthocyanin Pigment 2-
PAP2(MYB90)AT1G66390-Bra039763 (s)Production of Anthocyanin Pigment 2-
MYB113AT1G66370-Bra039763 (s)MYB Domain Protein 113(Stracke et al., 2001)
MYB113AT1G66370-Bra004162 (s)MYB Domain Protein 113-
MYB114AT1G66380-Bra039763 (s)MYB Domain Protein 114(Stracke et al., 2001)
MYB114AT1G66380-Bra004162 (s)MYB Domain Protein 114-
TT8AT4G09820BrTT8Bra037887 (s)Transparent Testa 8(Nesi et al., 2000; Zhang et al., 2003)
GL3AT5G41315BrGL3Bra025508 (s)Glabrous 3(Bernhardt et al., 2003)
EGL3AT1G63650BrEGL3.1Bra027796 (s)Enhancer of Glabrous 3(Bernhardt et al., 2003)
EGL3AT1G63650BrEGL3.2Bra027653 (s)Enhancer of Glabrous 3-
TTG1AT5G24520BrTTG1.1Bra009770 (s)Transparent Testa Glabrous 1(Gonzalez et al., 2008)
TTG1AT5G24520BrTTG1.2Bra029411 (s)Transparent Testa Glabrous 1-
MYBL2AT1G71030BrMYBL2.1Bra016164 (s)MYB-Like 2(Dubos et al., 2008)
MYBL2AT1G71030BrMYBL2.2Bra007957 (s)MYB-Like 2-
CPCAT2G46410BrCPC1Bra004539 (s)CAPRICE(Zhu et al., 2009)
CPCAT2G46410BrCPC2Bra039283 (s)CAPRICE-
LBD37AT5G67420BrLBD37.1Bra012164 (s)LOB Domain-containing Protein 37(Rubin et al., 2009)
LBD37AT5G67420BrLBD37.2Bra031833 (s)LOB Domain-containing Protein 37-
LBD37AT5G67420BrLBD37.3Bra037847 (s)LOB Domain-containing Protein 37-
LBD38AT3G49940BrLBD38.1Bra036040 (s)LOB Domain-containing Protein 38(Rubin et al., 2009)
LBD38AT3G49940BrLBD38.2Bra012913 (s)LOB Domain-containing Protein 38-
LBD39AT4G37540BrLBD39.1Bra011772 (s)LOB Domain-containing Protein 39(Rubin et al., 2009)
LBD39AT4G37540BrLBD39.2Bra017831 (s)LOB Domain-containing Protein 39-
TT19AT5G17220BrTT19.1Bra008570 (s)Transparent Testa 19(Kitamura et al., 2004; Sun et al., 2012)
TT19AT5G17220BrTT19.2Bra023602 (s)Transparent Testa 19-

"(s)" indicates BrABGs that exhibit synteny, and "T" indicates genes in the same tandem array as the above genes.

Ning Guo, Feng Cheng, Jian Wu, Bo Liu, Shuning Zheng, Jianli Liang and Xiaowu Wang Anthocyanin biosynthetic genes in Brassica rapa, BMC Genomics 2014, 15:426.